setReferenceGenome: set path for reference genome object
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
View source: R/ReferenceGenome.R
Description
This method defines the path where reference genome is stored
Usage
1
setReferenceGenome(reference.file)
Arguments
reference.file
is the location of the fasta format sequence file for
reference genome
Value
None
Examples
1
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3
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5
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7
init()
referenceFasta <- system.file("extdata",
"Escherichia_coli_complete_genome.fasta",
package = "nanopoRe")
setReferenceGenome(referenceFasta)
# and check that something has been stored ...
getReferenceGenome()
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value Examples
View source: R/ReferenceGenome.R
Description
This method defines the path where reference genome is stored
Usage
1 | setReferenceGenome(reference.file)
|
Arguments
reference.file |
is the location of the fasta format sequence file for reference genome |
Value
None
Examples
1 2 3 4 5 6 7 | init()
referenceFasta <- system.file("extdata",
"Escherichia_coli_complete_genome.fasta",
package = "nanopoRe")
setReferenceGenome(referenceFasta)
# and check that something has been stored ...
getReferenceGenome()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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