getSequenceQualityMismatchCount: count of fastq elements rejected due to mismatch between...
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Value
Examples
Description
count of fastq elements rejected due to mismatch between sequence and
quality field lengths
Usage
1
Value
integer count of fastq entries with seq/qual length challenges
Examples
1
2
3
4
fastq <- system.file("extdata", "frankenFastq.fastq.gz",
package = "nanopoRe")
fastqValidator(fastq)
getSequenceQualityMismatchCount()
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Value Examples
Description
count of fastq elements rejected due to mismatch between sequence and quality field lengths
Usage
1 |
Value
integer count of fastq entries with seq/qual length challenges
Examples
1 2 3 4 | fastq <- system.file("extdata", "frankenFastq.fastq.gz",
package = "nanopoRe")
fastqValidator(fastq)
getSequenceQualityMismatchCount()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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