fastqValidator: parse a fastq file aiming to validate sequences
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
Description
fastqValidator will parse the specified fastq (or fastq.gz) file looking
for fastq entry compliance. A boolean value of overall file compliance will
be returned. Additional summary counts describing the reason for rejection
are also made available
Usage
1
fastqValidator(fastq)
Arguments
fastq
A fastq format DNA/RNA sequence file
Value
logical defining if fastq provided is indeed valid fastq
Examples
1
2
3
4
5
fastq <- system.file("extdata", "example.fastq.gz", package = "nanopoRe")
fastqValidator(fastq)
badFastq <- system.file("extdata", "frankenFastq.fastq.gz",
package = "nanopoRe")
fastqValidator(badFastq)
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value Examples
Description
fastqValidator will parse the specified fastq (or fastq.gz) file looking for fastq entry compliance. A boolean value of overall file compliance will be returned. Additional summary counts describing the reason for rejection are also made available
Usage
1 | fastqValidator(fastq)
|
Arguments
fastq |
A fastq format DNA/RNA sequence file |
Value
logical defining if fastq provided is indeed valid fastq
Examples
1 2 3 4 5 | fastq <- system.file("extdata", "example.fastq.gz", package = "nanopoRe")
fastqValidator(fastq)
badFastq <- system.file("extdata", "frankenFastq.fastq.gz",
package = "nanopoRe")
fastqValidator(badFastq)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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