Files in sapfluxnet/sapfluxnetQC1
Package with functions related to sapfluxnet project data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/SfnData_class.R
R/SfnData_generics.R
R/SfnData_methods.R
R/df_functions.R
R/dl_data_loading_functions.R
R/log_functions.R
R/out_outliers_app.R
R/qc_coordinates_functions.R
R/qc_data_general_checks.R
R/qc_gaps_functions.R
R/qc_gaps_functions_eff.R
R/qc_main.R
R/qc_md_general_checks.R
R/qc_outliers_and_ranges.R
R/qc_plant_functions.R
R/qc_sitemd_checks.R
R/qc_species_functions.R
R/qc_unit_transformations.R
R/rep_functions.R
R/sm_utils.R
R/vis_functions.R
README.md
inst/Rmd_templates/LVL2_out_report.Rmd
inst/Rmd_templates/LVL2_units_report.Rmd
inst/Rmd_templates/QC_report.Rmd
inst/Rmd_templates/QC_report_NaN.Rmd
inst/Rmd_templates/received_to_accepted.Rmd
inst/Rmd_templates/sfn_monitor.Rmd
inst/run_scripts/debug_script.R
inst/run_scripts/main_script.R
inst/run_scripts/outliers_script_template.R
man/SfnData-class.Rd
man/as_sfn_data.Rd
man/create_dic.Rd
man/df_accepted_to_lvl1.Rd
man/df_copy_templates.Rd
man/df_flag_to_lvl2_app.Rd
man/df_folder_structure.Rd
man/df_get_data_folders.Rd
man/df_get_status.Rd
man/df_lvl1_to_lvl2.Rd
man/df_lvl2_folder_structure.Rd
man/df_read_SfnData.Rd
man/df_received_to_accepted.Rd
man/df_rem_to_units.Rd
man/df_report_folder_creation.Rd
man/df_reset_data_status.Rd
man/df_set_status.Rd
man/df_start_status.Rd
man/df_warn_to_rem.Rd
man/df_whos_ready_to.Rd
man/df_write_SfnData.Rd
man/dl_data.Rd
man/dl_data_col_classes.Rd
man/dl_dec_char_detect.Rd
man/dl_get_si_code.Rd
man/dl_metadata.Rd
man/dl_na_char_generator.Rd
man/hello.Rd
man/log_sapfluxnet_action.Rd
man/log_sapfluxnet_format.Rd
man/log_sapfluxnet_setup.Rd
man/lvl3_process.Rd
man/out_app.Rd
man/out_confirmation_app.Rd
man/plot-SfnData-missing-method.Rd
man/qc_as_timestamp.Rd
man/qc_check_coordinates.Rd
man/qc_cm_cm_h.Rd
man/qc_coord_sign_test.Rd
man/qc_coordinates.Rd
man/qc_data_results_table.Rd
man/qc_download_maps.Rd
man/qc_email_check.Rd
man/qc_env_dics.Rd
man/qc_env_ranges.Rd
man/qc_env_vars_presence.Rd
man/qc_ext_radiation.Rd
man/qc_factor_values.Rd
man/qc_fix_latlong_errors.Rd
man/qc_fix_timestamp.Rd
man/qc_get_biome.Rd
man/qc_get_biomes_spdf.Rd
man/qc_get_sapw_md.Rd
man/qc_get_timestep.Rd
man/qc_get_timezone.Rd
man/qc_is_timestamp.Rd
man/qc_md_cols.Rd
man/qc_md_results_table.Rd
man/qc_mind_the_gap.Rd
man/qc_mind_the_gap_eff.Rd
man/qc_out_hampel_filter.Rd
man/qc_out_of_range.Rd
man/qc_out_remove.Rd
man/qc_outliers_process.Rd
man/qc_outliers_subs.Rd
man/qc_pl_treatments.Rd
man/qc_plant_dics.Rd
man/qc_rad_conversion.Rd
man/qc_range_dic.Rd
man/qc_rh.Rd
man/qc_sapf_ranges.Rd
man/qc_sapw_area_calculator.Rd
man/qc_sapw_conversion.Rd
man/qc_set_timezone.Rd
man/qc_site_dics.Rd
man/qc_soil_texture.Rd
man/qc_species_dics.Rd
man/qc_species_names.Rd
man/qc_species_names_fix.Rd
man/qc_species_names_info.Rd
man/qc_species_verification.Rd
man/qc_stand_dics.Rd
man/qc_start_process.Rd
man/qc_swc_check.Rd
man/qc_swc_fix.Rd
man/qc_time_interval.Rd
man/qc_timestamp_concordance.Rd
man/qc_timestamp_errors.Rd
man/qc_timestamp_nas.Rd
man/qc_transf_list.Rd
man/qc_transformation_vars.Rd
man/qc_units_process.Rd
man/qc_vpd.Rd
man/remove_dupcols.Rd
man/rep_sfn_render.Rd
man/sfn_data2csv.Rd
man/sfn_data_constructor.Rd
man/sfn_get_generics.Rd
man/sfn_get_methods.Rd
man/sfn_replacement.Rd
man/sfn_replacement_generics.Rd
man/sfn_validity.Rd
man/show-SfnData-method.Rd
man/sm_solarTIMESTAMP_adder.Rd
man/sm_status_updater.Rd
man/sub-SfnData-numeric-ANY-missing-method.Rd
man/theme_sfn.Rd
man/vis_biome.Rd
man/vis_environmental_responses.Rd
man/vis_gap_lines.Rd
man/vis_gaps_calendar.Rd
man/vis_location_biome.Rd
man/vis_plot_the_gap.Rd
man/write_sfn_data.Rd
sapfluxnetQC.Rproj
tests/testthat.R
tests/testthat/BAR.RData
tests/testthat/FOO.RData
tests/testthat/foo.csv
tests/testthat/foo.xlsx
tests/testthat/foo_env.csv
tests/testthat/foo_nan.csv
tests/testthat/foo_nan.xlsx
tests/testthat/foo_nan_env.csv
tests/testthat/foo_objects.RData
tests/testthat/test_A_maps_download.R
tests/testthat/test_B_check_coordinates.R
tests/testthat/test_C_fix_latlong_errors.R
tests/testthat/test_D_metadata_load.R
tests/testthat/test_E_data_load.R
tests/testthat/test_F_dictionaries.R
tests/testthat/test_G_md_general_checks.R
tests/testthat/test_H_data_general_checks.R
tests/testthat/test_I_unit_transformations.R
tests/testthat/test_J_data_flow.R
tests/testthat/test_K_gaps.R
tests/testthat/test_L_ranges.R
tests/testthat/test_M_visualisation.R
tests/testthat/test_O_SfnData.R
tests/testthat/test_Z_main.R
to_do
vignettes/Data_Flow.Rmd
vignettes/How_to_perform_QC_in_the_data.Rmd
vignettes/Manual_Changes_Protocol.Rmd
vignettes/Settings_configuration.Rmd
vignettes/qc_functions_docs.Rmd
vignettes/reports_flow.Rmd
vignettes/resources/Data_folders.svg
vignettes/resources/Project_folders_tree.svg
vignettes/resources/QC1.svg
vignettes/resources/QC2.svg
vignettes/resources/QC_summary.svg
vignettes/resources/create_dic.svg
vignettes/resources/df_accepted_to_lvl1.svg
vignettes/resources/df_copy_templates.svg
vignettes/resources/df_flag_to_lvl2_app.png
vignettes/resources/df_folder_structure.svg
vignettes/resources/df_get_data_folders.svg
vignettes/resources/df_get_status.svg
vignettes/resources/df_lvl1_to_lvl2.svg
vignettes/resources/df_lvl2_folder_structure.svg
vignettes/resources/df_read_SfnData.svg
vignettes/resources/df_received_to_accepted.svg
vignettes/resources/df_received_to_accepted_FUNCTION.svg
vignettes/resources/df_rem_to_units.svg
vignettes/resources/df_report_folder_creation.svg
vignettes/resources/df_reset_data_status.svg
vignettes/resources/df_set_status.svg
vignettes/resources/df_start_status.svg
vignettes/resources/df_warn_to_rem.svg
vignettes/resources/df_whos_ready_to.svg
vignettes/resources/df_write_SfnData.svg
vignettes/resources/dl_data.svg
vignettes/resources/dl_data_col_classes.svg
vignettes/resources/dl_dec_char_detect.svg
vignettes/resources/dl_get_si_code.svg
vignettes/resources/dl_metadata.svg
vignettes/resources/dl_na_char_generator.svg
vignettes/resources/get_env.svg
vignettes/resources/get_env_flags.svg
vignettes/resources/get_env_rep.svg
vignettes/resources/get_methods_md.svg
vignettes/resources/get_sapf.svg
vignettes/resources/get_sapf_flags.svg
vignettes/resources/log_sapfluxnet_action.svg
vignettes/resources/log_sapfluxnet_format.svg
vignettes/resources/log_sapfluxnet_setup.svg
vignettes/resources/out_app.png
vignettes/resources/out_confirmation_app.png
vignettes/resources/plot_method.svg
vignettes/resources/qc_as_timestamp.svg
vignettes/resources/qc_check_coordinates.svg
vignettes/resources/qc_cm_cm_h.svg
vignettes/resources/qc_coord_sign_test.svg
vignettes/resources/qc_coordinates.svg
vignettes/resources/qc_data_results_table.svg
vignettes/resources/qc_download_maps.svg
vignettes/resources/qc_email_check.svg
vignettes/resources/qc_env_dics.svg
vignettes/resources/qc_env_ranges.svg
vignettes/resources/qc_env_vars_presence.svg
vignettes/resources/qc_ext_radiation.svg
vignettes/resources/qc_factor_values.svg
vignettes/resources/qc_fix_latlong_errors.svg
vignettes/resources/qc_fix_timestamp.svg
vignettes/resources/qc_get_biome.svg
vignettes/resources/qc_get_biomes_spdf.svg
vignettes/resources/qc_get_sapw_md.svg
vignettes/resources/qc_get_timestep.svg
vignettes/resources/qc_get_timezone.svg
vignettes/resources/qc_is_timestamp.svg
vignettes/resources/qc_md_cols.svg
vignettes/resources/qc_md_results_table.svg
vignettes/resources/qc_mind_the_gap.svg
vignettes/resources/qc_out_hampel_filter.svg
vignettes/resources/qc_out_median.svg
vignettes/resources/qc_out_medianreg.svg
vignettes/resources/qc_out_of_range.svg
vignettes/resources/qc_out_remove.svg
vignettes/resources/qc_out_tukeyline.svg
vignettes/resources/qc_outliers_process.svg
vignettes/resources/qc_pl_treatments.svg
vignettes/resources/qc_plant_dics.svg
vignettes/resources/qc_rad_conversion.svg
vignettes/resources/qc_range_dic.svg
vignettes/resources/qc_rh.svg
vignettes/resources/qc_sapf_range_check.svg
vignettes/resources/qc_sapf_ranges.svg
vignettes/resources/qc_sapw_area_calculator.svg
vignettes/resources/qc_sapw_conversion.svg
vignettes/resources/qc_set_timezone.svg
vignettes/resources/qc_site_dics.svg
vignettes/resources/qc_soil_texture.svg
vignettes/resources/qc_species_dics.svg
vignettes/resources/qc_species_names.svg
vignettes/resources/qc_species_names_fix.svg
vignettes/resources/qc_species_names_info.svg
vignettes/resources/qc_species_verification.svg
vignettes/resources/qc_stand_dics.svg
vignettes/resources/qc_start_process.svg
vignettes/resources/qc_swc_check.svg
vignettes/resources/qc_swc_fix.svg
vignettes/resources/qc_time_interval.svg
vignettes/resources/qc_timestamp_concordance.svg
vignettes/resources/qc_timestamp_errors.svg
vignettes/resources/qc_timestamp_nas.svg
vignettes/resources/qc_transf_list.svg
vignettes/resources/qc_transformation_vars.svg
vignettes/resources/qc_units_process.svg
vignettes/resources/qc_vpd.svg
vignettes/resources/remove_dupcols.svg
vignettes/resources/rep_sfn_render.svg
vignettes/resources/rmd_QC_report.pdf
vignettes/resources/rmd_QC_report.svg
vignettes/resources/rmd_received_to_accepted.svg
vignettes/resources/symbols_legend.svg
vignettes/resources/vis_biome.svg
vignettes/resources/vis_gap_lines.svg
vignettes/resources/vis_gaps_calendar.svg
vignettes/resources/vis_location_biome.svg
vignettes/resources/vis_plot_the_gap.svg
