mcell_gset_filter_szcor: gnereate/filter gene features from statistics on correlation...

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

gnereate/filter gene features from statistics on correlation with umi count

Description

gnereate/filter gene features from statistics on correlation with umi count

Usage

mcell_gset_filter_szcor(gstat_id, gset_id, T_szcor, force_new = F)

Arguments

gstat_id	the ID of the gstat object to use
gset_id	if this exists, filter_varmean will restrict hte current genes in the set with genes matching the var mean threshold, if not, it will generate a new gene sets object with one set including all high variance genes
T_szcor	upper limit on normalized sz_cor (low values mark interesting gene features). If you use this, consider values around -0.1 - but evaluate carefully your decision using the gstat empirical data

tanaylab/metacell documentation built on Oct. 19, 2023, 1:01 p.m.