mcell_gset_filter_varmean: gnereate/filter gene features from gstat normalized var/mean

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

gnereate/filter gene features from gstat normalized var/mean

Description

gnereate/filter gene features from gstat normalized var/mean

Usage

mcell_gset_filter_varmean(gstat_id, gset_id, T_vm, force_new = F)

Arguments

gstat_id	the ID of the gstat object to use
gset_id	if this exists, filter_varmean will restrict hte current genes in the set with genes matching the var mean threshold, if not, it will generate a new gene sets object with one set including all high variance genes
T_vm	the threshold on normalized var/mean, recommended values are usually around 0.2, but this may vary with the data

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.