mcell_gset_from_mc_markers: Generate a gene set of markers from a metacell cover

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Generate a gene set of markers from a metacell cover

Description

This should be mostly used for visualization and highlighting key genes

Usage

mcell_gset_from_mc_markers(
  gset_id,
  mc_id,
  filt_gset_id = NULL,
  blacklist_gset_id = NULL,
  non_marker_genes = NULL
)

Arguments

gset_id	id of gene set to generate
mc_id	id of metacell object
filt_gset_id	gene set to select from (null by default)
blacklist_gset_id	gene set to exclude (null by default)
non_marker_genes	list of gene names to avoid

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.