mcell_import_multi_mars: Load a matrix from a MARS-seq multi-batch dataset. The scdb...

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Load a matrix from a MARS-seq multi-batch dataset. The scdb version of mcell_read_multi_scmat_mars

Description

Load a matrix from a MARS-seq multi-batch dataset. The scdb version of mcell_read_multi_scmat_mars

Usage

mcell_import_multi_mars(
  mat_nm,
  dataset_table_fn,
  base_dir,
  patch_cell_name = F,
  md_filter = NULL,
  force = FALSE
)

Arguments

mat_nm	- the name of the new matrix in scdb
dataset_table_fn	- path of the key table.
base_dir	- directory where raw mars files are located (dataset table points to subdirectories of this)
force	- if true, will import from MARS files even when the matrix is present in the DB

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.