mcell_import_scmat_10x: Load a matrix from a 10x dataset. The scdb version of...

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Load a matrix from a 10x dataset. The scdb version of mcell_read_multi_scmat_10x

Description

Load a matrix from a 10x dataset. The scdb version of mcell_read_multi_scmat_10x

Usage

mcell_import_scmat_10x(
  mat_nm,
  base_dir = NULL,
  matrix_fn = NULL,
  genes_fn = NULL,
  cells_fn = NULL,
  force = FALSE
)

Arguments

mat_nm	the name of the new matrix in scdb
base_dir	a directory with data files - if this is specified, the matrix,gene and cells file names are determined by defulat
matrix_fn	if base_dir is missing, this must define the matrix file name to be imported
genes_fn	if base_dir is missing this must define the genes file name to be imported
cells_fn	if base_dir is missing, this must define the cells file name to be imported
force	- if true, will import from 10x files even when the matrix is present in the DB

tanaylab/metacell documentation built on Oct. 19, 2023, 1:01 p.m.