mcell_mc2d_plot: Plot mc+cell graph using pre-defined mc colorization

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Plot mc+cell graph using pre-defined mc colorization

Description

Plot mc+cell graph using pre-defined mc colorization

Usage

mcell_mc2d_plot(
  mc2d_id,
  legend_pos = "topleft",
  plot_edges = T,
  min_edge_l = 0,
  edge_w = 1,
  short_edge_w = 0,
  show_mcid = T,
  cell_outline = F,
  colors = NULL,
  fig_fn = NULL,
  fn_suf = "",
  sc_cex = 1,
  filt_mc = NULL
)

Arguments

mc2d_id	mc2d object to plot
legend_pos	position of legend
plot_edges	plot edges between metacells (true by default)
min_edge_l	(defulat 0) length of edges that are consider long
edge_w	width of long edges
short_edge_w	with of short edges
show_mcid	should metacell id be plotted
cell_outline	should single cell be drawn with outline
colors	can provide color vector to overide the default mc@colors
fig_fn	override the default file name in the scfig directory
sc_cex	size of single cell points
filt_mc	optionally a factor defining which MCs to plot

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.