mcell_mc_export_tab: Output genes cell modules footprint matrix with metadata on...

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Output genes cell modules footprint matrix with metadata on the cell modules

Description

Output genes cell modules footprint matrix with metadata on the cell modules

Usage

mcell_mc_export_tab(
  mc_id,
  gstat_id = NULL,
  mat_id = NULL,
  T_gene_tot = 50,
  T_fold = 1,
  metadata_fields = c("batch_set_id")
)

Arguments

mc_id	meta cell object id
gstat_id	gstat object id
T_gene_tot	minimal number of umis to include gene (to reduce table size)
T_fold	threshold for maximal fold change over metacells
metadata_fields	metadata field names to be used as factors and breakdown over mcs

Value

Nothing. But save a table in the figure directory that can be loaded to excel

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.