mcell_mc_from_coclust_balanced: build a metacell cover from co-clust data through filtering...

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

build a metacell cover from co-clust data through filtering un-balanced edges and running graph cover

Description

build a metacell cover from co-clust data through filtering un-balanced edges and running graph cover

Usage

mcell_mc_from_coclust_balanced(
  mc_id,
  coc_id,
  mat_id,
  K,
  min_mc_size,
  alpha = 2
)

Arguments

mc_id	Id of new metacell object
coc_id	cocluster object to use
mat_id	mat object to use when building the mc object
K	- this will
min_mc_size	minimum mc size for graph cov
alpha	the threshold for filtering edges by their coclust weight is alpha * (Kth highest coclust on either node1 or node2)

tanaylab/metacell documentation built on Oct. 19, 2023, 1:01 p.m.