mcell_mc_from_coclust_hc: build a metacell cover from a co-clust object using a simple...
In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

mcell_mc_from_coclust_hc

R Documentation

build a metacell cover from a co-clust object using a simple hclust approach

build a metacell cover from a co-clust object using a simple hclust approach

mcell_mc_from_coclust_hc(mc_id, coc_id, mat_id, K, force = F)

`mc_id`	Id of new metacell object
`coc_id`	cocluster object to use
`mat_id`	mat object to use when building the mc object
`K`	number of clusters to generate from the coclust hclust. Look at the coclust plot to detemrine this. But make sure you keep the clusters at reasonable size (e.g. <100) for use as metacells.
`force`	set this to true to overide size limits on hclust