mcell_mc_from_coclust_louv_sub: build a metacell cover from a big co-clust using louvain...

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

build a metacell cover from a big co-clust using louvain clustering and metacell coverage within clusters

Description

build a metacell cover from a big co-clust using louvain clustering and metacell coverage within clusters

Usage

mcell_mc_from_coclust_louv_sub(
  mc_id,
  coc_id,
  mat_id,
  max_clust_size,
  max_mc_size,
  min_mc_size,
  T_weight = 1
)

Arguments

mc_id	Id of new metacell object
coc_id	cocluster object to use
mat_id	mat object to use when building the mc object
max_clust_size	maximum clust size. Bigger chunks will be clustered
max_mc_size	maximum mc size (bigger clusters will be dissected)

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.