mcell_mc_plot_confusion: plot a metacel confusion matrix

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

plot a metacel confusion matrix

Description

plot a metacel confusion matrix

Usage

mcell_mc_plot_confusion(
  mc_id,
  graph_id,
  coc_id = NULL,
  use_orig_order = F,
  mc_order = NULL,
  fig_fn = NULL,
  symmetrize = F
)

Arguments

mc_id	id of metacell object ina scdb
graph_id	cell to cell similarity graph
coc_id	coclustering object to be used as the graph. If this is not null, graph_id must be null (and vice versa)
use_orig_order	TRUE if you want to preserve the metacell order in the figu. Flase by default
mc_order	defining an order for the MCs. If this is null and use_orig_order is false, the ordering will be based on hclust of the confusion matrix
symmetrize	should the graph be symetrized before analyzing the confuson matrix.

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.