mcell_mc_plot_vgels: plot a "gel" like diagram showing expression of a gene of...

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

plot a "gel" like diagram showing expression of a gene of interest over metacells that are classified into types

Description

plot a "gel" like diagram showing expression of a gene of interest over metacells that are classified into types

Usage

mcell_mc_plot_vgels(
  mc_id,
  gene_nms,
  reorder_preset = NULL,
  reorder = F,
  fig_fn = NULL,
  lane_w = 50,
  height = 350,
  plot_title = F
)

Arguments

mc_id	id of metacell object in scdb
reorder_preset	list of mc colors to define the "lanes"
reorder	should metacell types be sorted by gene intesity?
plot_title	display gene name as plot's title
gene_nm	gene of interest

tanaylab/metacell documentation built on Oct. 19, 2023, 1:01 p.m.