mcell_mc_reorder_hc: Reorder metacells using hierarchical clustering

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Reorder metacells using hierarchical clustering

Description

MEtacells are reorder according to their footprint similarity based on hclust and the reordering using two select antagonistic markers (that can be selected automatically)

Usage

mcell_mc_reorder_hc(
  mc_id,
  gene_left = NULL,
  gene_right = NULL,
  gset_blist_id = NULL
)

Arguments

mc_id	id of metacell object
gene_left	gene for reordering toward the left side (null by default)
gene_right	gene for reordering toward the right side (null by default)
gset_blist_id	id of gene set to blacklist while ordering (e.g. cell cycle genes)

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.