mcell_mc_reorder_hc: Reorder metacells using hierarchical clustering
In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

mcell_mc_reorder_hc

R Documentation

Reorder metacells using hierarchical clustering

Description

MEtacells are reorder according to their footprint similarity based on hclust and the reordering using two select antagonistic markers (that can be selected automatically)

Usage

mcell_mc_reorder_hc(
  mc_id,
  gene_left = NULL,
  gene_right = NULL,
  gset_blist_id = NULL
)

Arguments

`mc_id`	id of metacell object
`gene_left`	gene for reordering toward the left side (null by default)
`gene_right`	gene for reordering toward the right side (null by default)
`gset_blist_id`	id of gene set to blacklist while ordering (e.g. cell cycle genes)