mcell_mc_screen_outliers_1gene_fold: Simple screen for outlier cells in a metacell cover, finding...
In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data
mcell_mc_screen_outliers_1gene_fold R Documentation
Simple screen for outlier cells in a metacell cover, finding genes with overly high expression given their metacell mean
Description
Simple screen for outlier cells in a metacell cover, finding genes with overly high expression given their metacell mean
Usage
mcell_mc_screen_outliers_1gene_fold(new_mc_id, mc_id, mat_id, T_lfc)
Arguments
new_mc_id
id of new metacell to create
mc_id
ID of metacell in scdb
mat_id
matrix object to use (should be compatible with mc_id)
T_lfc
maximal log2 fold change over the expected to be considered as an outlier.
tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| mcell_mc_screen_outliers_1gene_fold | R Documentation |
Simple screen for outlier cells in a metacell cover, finding genes with overly high expression given their metacell mean
Description
Simple screen for outlier cells in a metacell cover, finding genes with overly high expression given their metacell mean
Usage
mcell_mc_screen_outliers_1gene_fold(new_mc_id, mc_id, mat_id, T_lfc)
Arguments
new_mc_id |
id of new metacell to create |
mc_id |
ID of metacell in scdb |
mat_id |
matrix object to use (should be compatible with mc_id) |
T_lfc |
maximal log2 fold change over the expected to be considered as an outlier. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.