mcell_new_mc2d: Generate a new metacell in scdb

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Generate a new metacell in scdb

Description

This constructs a meta cell cover object and puts it into scdb. It gets an MC assignment (cell->MC_ID), and a matrix, and call standard api of this class to compute the footprints.

Usage

mcell_new_mc2d(mc2d_id, mc_id, mc_x, mc_y, sc_x, sc_y, graph)

Arguments

mc2d_id	new id of 2d object to add
mc_id	id of scdb meta cell object we link to
mc_x	x coordinates of metacells
mc_y	y coordinates of metacells
sc_x	x coordinates of cells
sc_y	y coordinates of cells
graph	graph data frame (fields mc1,mc2 specifying edges between mc's)

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.