mcell_new_mcatlas: Generate a new atlas in scdb

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Generate a new atlas in scdb

Description

This constructs a meta cell atlas object

Usage

mcell_new_mcatlas(
  atlas_id,
  mat_id,
  naming_type,
  mc_id,
  graph_id,
  gset_id,
  type_annot
)

Arguments

mat_id	id matrix object
naming_type	gene name type
mc_id	id of metacell object
graph_id	id of cgraph object
gset_id	id of feature gene set
type_annot	data frame with type_id, type_name, type_color fields
edges_Knn	the knn parameter for neighbor type distribution

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.