mcell_read_multi_scmat_10x: read multiple 10x umi matrices and merge them, based on a...
In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data
mcell_read_multi_scmat_10x R Documentation
read multiple 10x umi matrices and merge them, based on a table defining the datasets. Field amp_batch_id from the table is added to the cell name to prevent cell names clashes.
Description
read multiple 10x umi matrices and merge them, based on a table defining the datasets. Field amp_batch_id from the table is added to the cell name to prevent cell names clashes.
Usage
mcell_read_multi_scmat_10x(datasets_table_fn, base_dir)
Arguments
datasets_table_fn
the index file of the 10x multi batch dataset. Fileds include: Batch.Set.ID, mat_fn, genes_fn, cells_fn. The first field must be specifieid for each row. The others may be NA, in which case the import process will search for base_dir/Batch.Set.ID/matrix.mtx, genes.tsv, barcodes.tsv.
base_dir
where the input matrices reside.
tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.
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| mcell_read_multi_scmat_10x | R Documentation |
read multiple 10x umi matrices and merge them, based on a table defining the datasets. Field amp_batch_id from the table is added to the cell name to prevent cell names clashes.
Description
read multiple 10x umi matrices and merge them, based on a table defining the datasets. Field amp_batch_id from the table is added to the cell name to prevent cell names clashes.
Usage
mcell_read_multi_scmat_10x(datasets_table_fn, base_dir)
Arguments
datasets_table_fn |
the index file of the 10x multi batch dataset. Fileds include: Batch.Set.ID, mat_fn, genes_fn, cells_fn. The first field must be specifieid for each row. The others may be NA, in which case the import process will search for base_dir/Batch.Set.ID/matrix.mtx, genes.tsv, barcodes.tsv. |
base_dir |
where the input matrices reside. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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