mctnetwork_gen_gmod_mc_t: Given a list of genes and a matrix, this compute mean umi per...

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Given a list of genes and a matrix, this compute mean umi per metacell (rows) and time (column).

Description

Given a list of genes and a matrix, this compute mean umi per metacell (rows) and time (column).

Usage

mctnetwork_gen_gmod_mc_t(mct_id, mat_id, genes, min_percentile = 0.05)

Arguments

mct_id	mct network object
mat_id	umi matrix object
genes	list of gene names
min_percentile	percentile value to use as minimum threshold (this is used to avoid very small values and regularize color scale, default 0.05)

Value

A matrix on metacells and time with mean umi fraction over the gene module

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.