mctnetwork_gen_gmod_mc_t: Given a list of genes and a matrix, this compute mean umi per...
In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data
mctnetwork_gen_gmod_mc_t R Documentation
Given a list of genes and a matrix, this compute mean umi per metacell (rows) and time (column).
Description
Given a list of genes and a matrix, this compute mean umi per metacell (rows) and time (column).
Usage
mctnetwork_gen_gmod_mc_t(mct_id, mat_id, genes, min_percentile = 0.05)
Arguments
mct_id
mct network object
mat_id
umi matrix object
genes
list of gene names
min_percentile
percentile value to use as minimum threshold (this is used to avoid very small values and regularize color scale, default 0.05)
Value
A matrix on metacells and time with mean umi fraction over the gene module
tanaylab/metacell documentation built on Oct. 19, 2023, 1:01 p.m.
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| mctnetwork_gen_gmod_mc_t | R Documentation |
Given a list of genes and a matrix, this compute mean umi per metacell (rows) and time (column).
Description
Given a list of genes and a matrix, this compute mean umi per metacell (rows) and time (column).
Usage
mctnetwork_gen_gmod_mc_t(mct_id, mat_id, genes, min_percentile = 0.05)
Arguments
mct_id |
mct network object |
mat_id |
umi matrix object |
genes |
list of gene names |
min_percentile |
percentile value to use as minimum threshold (this is used to avoid very small values and regularize color scale, default 0.05) |
Value
A matrix on metacells and time with mean umi fraction over the gene module
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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