mctnetwork_gen_network: Compute and update network strcuture from mc, manifodld costs

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Compute and update network strcuture from mc, manifodld costs

Description

Compute and update network strcuture from mc, manifodld costs

Usage

mctnetwork_gen_network(
  mct,
  mc_leak,
  capacity_var_factor = NULL,
  off_capacity_cost1 = 1,
  off_capacity_cost2 = 1000,
  k_norm_ext_cost = 2,
  k_ext_norm_cost = 2,
  k_ext_ext_cost = 100,
  T_cost = 1000
)

Arguments

mct	mct network object
mc_leak	the fraciton of frequency loss per mc per time step. All zero if you don't know what to expect.

Value

an updated mct object

tanaylab/metacell documentation built on Oct. 19, 2023, 1:01 p.m.