port_cor: port_cor matrix correlation wrap. Parameter selects which...

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

port_cor matrix correlation wrap. Parameter selects which function to use, cor or tgs_cor. Tgs_cor can be more efficien if available

Description

port_cor matrix correlation wrap. Parameter selects which function to use, cor or tgs_cor. Tgs_cor can be more efficien if available

Usage

port_cor(x, pairwise.complete.obs = F, spearman = F, tidy = F, threshold = 0)

Arguments

x	matrix whole columans will be analyzed
pairwise.complete.obs	- similar to cor, if this is T, NA's will be ibe ignored and only values that are pairwise available will be used to compute the correlaiton
spearman	TRUE if rank correlation is to be used
tidy	if TRUE, the output will be tidy
threshold	defining a threshold to deterine which correlation to be reported if using the tidy format

Value

the corelation matrix of the columns

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.