scm_ignore_cells: Set ignored (i.e. blacklisted) cells

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Set ignored (i.e. blacklisted) cells

Description

Given a list of cells to ignore, this will cancel any previous policy for blacklisting and remove the given cells to the ignore_mat. Downstream algorithm usually ignore these cells altogether, for any purpose including normalization. However, ignored cells can be accessed and analyzed seperately for validation/tests or when they represent some relevant biology (e.g. cell cycle)

Usage

scm_ignore_cells(scmat, ig_cells, reverse = FALSE)

Arguments

scmat	the matrix object
reverse	false by default, if this is true the set of cells to ingore is the complement of the given list
ig_cell	a list of cell names to ignore

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.