scm_ignore_genes: Set ignored (i.e. blacklisted) genes

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Set ignored (i.e. blacklisted) genes

Description

Given a list of genes to ignore, this will cancel any previous policy for blacklisting and remove the given genes to the ignore_mat. Downstream algorithm usually ignore these genes altogether, for any purpose including normalization. However, ignored genes can be accessed and analyzed seperately for validation/tests or when they represent some relevant biology (e.g. cell cycle)

Usage

scm_ignore_genes(scmat, ig_genes, reverse = FALSE)

Arguments

scmat	the matrix object
reverse	false by default, if this is true the set of genes to ingore is the complement of the given list
ig_gene	a list of gene names to ignore

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.