scmat_read_scmat_10x_custom: Read a custom count matrix from the output of a 10x run....
In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data
scmat_read_scmat_10x_custom R Documentation
Read a custom count matrix from the output of a 10x run. Batches can be stripped from the cell identifier if in BARCODE-LANE format.
Description
Read a custom count matrix from the output of a 10x run. Batches can be stripped from the cell identifier if in BARCODE-LANE format.
Usage
scmat_read_scmat_10x_custom(matrix_fn, dataset_id = "NS")
Arguments
matrix_fn
matrix input file name. Expecting a count matrix saved as .RDS file. Colnames represent barcodes, rownames represent custom gene annotation.
tanaylab/metacell documentation built on Oct. 19, 2023, 1:01 p.m.
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| scmat_read_scmat_10x_custom | R Documentation |
Read a custom count matrix from the output of a 10x run. Batches can be stripped from the cell identifier if in BARCODE-LANE format.
Description
Read a custom count matrix from the output of a 10x run. Batches can be stripped from the cell identifier if in BARCODE-LANE format.
Usage
scmat_read_scmat_10x_custom(matrix_fn, dataset_id = "NS")
Arguments
matrix_fn |
matrix input file name. Expecting a count matrix saved as .RDS file. Colnames represent barcodes, rownames represent custom gene annotation. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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