tgMCCov-class: Meta cell cover

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Meta cell cover

Description

Representing a meta cell cover of a given cell graph (or more generally of a scRNA data matrix)

Slots

mc

assignment of cells to metacell id

cell_names

names of cells (all other objects use running integres relating to these names)

mc_fp

a matrix showing for each gene (row) the relative enrichment of umis

e_gc

a matrix showin

g for each gene (row) the mean umi count (without normalizing for cell size)

cov_gc

a matrix showing for each gene (row) the fraction of cells in the meta cell that are non zero for the umi

n_bc

a matrix detemrining for each batch (row) the meta cell breakdown

annots

names of metacells (oridnal numbers by default)

colors

colors of metacells

color_key

data.frame defining color per markers genes

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.