tgMCTNetwork-class: temporal netwrok over metacells

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

temporal netwrok over metacells

Description

Splitting metacells over a discrete time axis, defining manifold connections and estimated flows over them

Slots

mc_id

id of the metacell object we represent as a network

mgraph_id

id of the mgraph object defining manifold structure

times_nms

names of the time points (Default 1:T)

mc_t

distribution of metacells (rows) over time points (cols)

mc_mgraph

a data frame defining triplets mc1, mc2, distance.

mc_manif_p

probability of moving between mcs - matrix

mc_manif_cost

probability of moving between mcs

network

- a data frame defining the network structure

edge_flows

- flow of mincost solution

mc_t_infer

- inferred fraction ofcells per mc and time

tanaylab/metacell documentation built on Jan. 29, 2025, 1:34 a.m.