API for ttriche/sesamizeGEO
the poor man's methylation suite (cf. `sesamizer`)

Global functions
.B2M Source code
.M2B Source code
.SNPcall Source code
.dumpGCT Source code
.extremality Source code
.getAry Source code
.getMappings Source code
.getPossible Source code
.get_dft Source code
.getetaddr Source code
.getsub Source code
.labelBottomAnnotations Source code
.mbMapByChr Source code
.nmfAsGRanges Source code
.plotSNPcallmat Source code
.ppm Source code
.prepGRanges Source code
.purify Source code
.purifyBetas Source code
.show.genome Source code
.show.platform Source code
.toBED4 Source code
MethArraySet Source code
NAfrac Man page Source code
SNPcalls Man page Source code
XYstats Man page Source code
addCharacteristics Man page Source code
addTitles Man page Source code
asGCT Man page Source code
asMethBlocks Man page Source code
assayToBigWigs Man page Source code
byExtremality Man page Source code
collapseAt Man page Source code
control_metrics Man page Source code
dumpFromIDATs Man page Source code
dumpQCfiles Man page Source code
elts Man page Source code
fexpit Man page Source code
firstPass Man page Source code
fitSexMix Man page Source code
flag_control_failures Man page Source code
flogit Man page Source code
getBarcodes Man page Source code
getGSMs Man page Source code
getIDAT Man page Source code
getRGChannelSet Man page Source code
getSamps Man page Source code
jet Man page
labelAnnotations Man page Source code
mergeMeth Man page Source code
mergeWithSNPs Man page Source code
merge_metadata Man page Source code
merge_rgSets Man page Source code
plotFlaggedControls Man page Source code
plotSNPcalls Man page Source code
plotSNPs Man page Source code
plotXYstats Man page Source code
processFromIDATs Man page Source code
processResult Man page Source code
purify Man page Source code
purifyBetas Man page Source code
regressFactors Man page Source code
rename_meta Man page Source code
rowDataToBigWig Man page Source code
rowExtremalities Man page Source code
sesamask Man page Source code
sesamiser Man page Source code
sesamize Man page Source code
sharedMethBlockPairs Source code Source code
splitSharedMethBlockPairs Source code Source code
switchMethBlocksGenome Man page Source code
testIDATs Man page Source code
vafClust Man page Source code
ttriche/sesamizeGEO documentation built on Nov. 12, 2023, 5:42 p.m.