asGCT: Dump DNA methylation values for quick and dirty IGV viewing
In ttriche/sesamizeGEO: the poor man's methylation suite (cf. `sesamizer`)
asGCT R Documentation
Dump DNA methylation values for quick and dirty IGV viewing
Description
Dump DNA methylation values for quick and dirty IGV viewing
Usage
asGCT(x, assay = 1, group = NULL, stub = NULL, genome = "hg19")
Arguments
x
a SummarizedExperiment-like object of some sort
assay
the name of the assay to dump (default: assays(x)[1])
group
a grouping factor to dump by (default: dump everyone)
stub
the filename stub to dump (default: name of x, or x_group)
genome
the genome to use (default is hg19, due to annotations)
Value
list a list of filenames dumped
ttriche/sesamizeGEO documentation built on Nov. 12, 2023, 5:42 p.m.
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| asGCT | R Documentation |
Dump DNA methylation values for quick and dirty IGV viewing
Description
Dump DNA methylation values for quick and dirty IGV viewing
Usage
asGCT(x, assay = 1, group = NULL, stub = NULL, genome = "hg19")
Arguments
x |
a SummarizedExperiment-like object of some sort |
assay |
the name of the assay to dump (default: assays(x)[1]) |
group |
a grouping factor to dump by (default: dump everyone) |
stub |
the filename stub to dump (default: name of x, or x_group) |
genome |
the genome to use (default is hg19, due to annotations) |
Value
list a list of filenames dumped
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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