processResult: sesamize a result with sensible QC and passing BPPARAM, etc.
In ttriche/sesamizeGEO: the poor man's methylation suite (cf. `sesamizer`)
processResult R Documentation
sesamize a result with sensible QC and passing BPPARAM, etc.
Description
sesamize a result with sensible QC and passing BPPARAM, etc.
Usage
processResult(x, addgeo = FALSE, justResult = TRUE, ...)
Arguments
x
a SummarizedExperiment-derived object with SNPs and controls
addgeo
optional: try to annotate from GEO, if not already done? (F)
...
options to pass to sesamize
justDump
just dump the sesamized result? (TRUE)
Value
a GenomicRatioSet (or an res if failure)
ttriche/sesamizeGEO documentation built on Nov. 12, 2023, 5:42 p.m.
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| processResult | R Documentation |
sesamize a result with sensible QC and passing BPPARAM, etc.
Description
sesamize a result with sensible QC and passing BPPARAM, etc.
Usage
processResult(x, addgeo = FALSE, justResult = TRUE, ...)
Arguments
x |
a SummarizedExperiment-derived object with SNPs and controls |
addgeo |
optional: try to annotate from GEO, if not already done? (F) |
... |
options to pass to sesamize |
justDump |
just dump the sesamized result? (TRUE) |
Value
a GenomicRatioSet (or an res if failure)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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