Files in ttriche/sesamizeGEO
the poor man's methylation suite (cf. `sesamizer`)
.Rbuildignore
.Rinstignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
Makefile
NAMESPACE
NEWS.md
R/MethArraySet-class.R
R/NAfrac.R
R/SNPcalls.R
R/XYstats.R
R/addCharacteristics.R
R/addTitles.R
R/asGCT.R
R/asMethBlocks.R
R/assayToBigWigs.R
R/byExtremality.R
R/coercions.R
R/collapseAt.R
R/control_metrics.R
R/dumpFromIDATs.R
R/dumpQCfiles.R
R/elts.R
R/fexpit.R
R/firstPass.R
R/fitSexMix.R
R/flag_control_failures.R
R/flogit.R
R/generics.R
R/getBarcodes.R
R/getGSMs.R
R/getIDAT.R
R/getRGChannelSet.R
R/getSamps.R
R/jet.R
R/labelAnnotations.R
R/mergeMeth.R
R/mergeWithSNPs.R
R/merge_metadata.R
R/merge_rgSets.R
R/plotFlaggedControls.R
R/plotSNPcalls.R
R/plotSNPs.R
R/plotXYstats.R
R/processFromIDATs.R
R/processRgSet.R
R/purify.R
R/regressFactors.R
R/rename_meta.R
R/rowDataToBigWig.R
R/rowExtremalities.R
R/sesamask.R
R/sesamiser.R
R/sesamize.R
R/switchMethBlocksGenome.R
R/testIDATs.R
R/vafClust.R
README.md
data/cytobands.hg19.rda
data/cytobands.hg38.rda
data/mbHg19Hg38.rda
data/methBlocks.rda
data/mfts.rda
man/NAfrac.Rd
man/SNPcalls.Rd
man/XYstats.Rd
man/addCharacteristics.Rd
man/addTitles.Rd
man/asGCT.Rd
man/asMethBlocks.Rd
man/assayToBigWigs.Rd
man/byExtremality.Rd
man/collapseAt.Rd
man/control_metrics.Rd
man/dumpFromIDATs.Rd
man/dumpQCfiles.Rd
man/elts.Rd
man/fexpit.Rd
man/firstPass.Rd
man/fitSexMix.Rd
man/flag_control_failures.Rd
man/flogit.Rd
man/getBarcodes.Rd
man/getGSMs.Rd
man/getIDAT.Rd
man/getRGChannelSet.Rd
man/getSamps.Rd
man/jet.Rd
man/labelAnnotations.Rd
man/mergeMeth.Rd
man/mergeWithSNPs.Rd
man/merge_metadata.Rd
man/merge_rgSets.Rd
man/plotFlaggedControls.Rd
man/plotSNPcalls.Rd
man/plotSNPs.Rd
man/plotXYstats.Rd
man/processFromIDATs.Rd
man/processResult.Rd
man/purify.Rd
man/regressFactors.Rd
man/rename_meta.Rd
man/rowDataToBigWig.Rd
man/rowExtremalities.Rd
man/sesamask.Rd
man/sesamiser.Rd
man/sesamize.Rd
man/switchMethBlocksGenome.Rd
man/testIDATs.Rd
man/vafClust.Rd
