Files in ttriche/sesamizeGEO
the poor man's methylation suite (cf. `sesamizer`)

.Rbuildignore
.Rinstignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
Makefile
NAMESPACE
NEWS.md R/MethArraySet-class.R R/NAfrac.R R/SNPcalls.R R/XYstats.R R/addCharacteristics.R R/addTitles.R R/asGCT.R R/asMethBlocks.R R/assayToBigWigs.R R/byExtremality.R R/coercions.R R/collapseAt.R R/control_metrics.R R/dumpFromIDATs.R R/dumpQCfiles.R R/elts.R R/fexpit.R R/firstPass.R R/fitSexMix.R R/flag_control_failures.R R/flogit.R R/generics.R R/getBarcodes.R R/getGSMs.R R/getIDAT.R R/getRGChannelSet.R R/getSamps.R R/jet.R R/labelAnnotations.R R/mergeMeth.R R/mergeWithSNPs.R R/merge_metadata.R R/merge_rgSets.R R/plotFlaggedControls.R R/plotSNPcalls.R R/plotSNPs.R R/plotXYstats.R R/processFromIDATs.R R/processRgSet.R R/purify.R R/regressFactors.R R/rename_meta.R R/rowDataToBigWig.R R/rowExtremalities.R R/sesamask.R R/sesamiser.R R/sesamize.R R/switchMethBlocksGenome.R R/testIDATs.R R/vafClust.R README.md
data/cytobands.hg19.rda
data/cytobands.hg38.rda
data/mbHg19Hg38.rda
data/methBlocks.rda
data/mfts.rda
man/NAfrac.Rd man/SNPcalls.Rd man/XYstats.Rd man/addCharacteristics.Rd man/addTitles.Rd man/asGCT.Rd man/asMethBlocks.Rd man/assayToBigWigs.Rd man/byExtremality.Rd man/collapseAt.Rd man/control_metrics.Rd man/dumpFromIDATs.Rd man/dumpQCfiles.Rd man/elts.Rd man/fexpit.Rd man/firstPass.Rd man/fitSexMix.Rd man/flag_control_failures.Rd man/flogit.Rd man/getBarcodes.Rd man/getGSMs.Rd man/getIDAT.Rd man/getRGChannelSet.Rd man/getSamps.Rd man/jet.Rd man/labelAnnotations.Rd man/mergeMeth.Rd man/mergeWithSNPs.Rd man/merge_metadata.Rd man/merge_rgSets.Rd man/plotFlaggedControls.Rd man/plotSNPcalls.Rd man/plotSNPs.Rd man/plotXYstats.Rd man/processFromIDATs.Rd man/processResult.Rd man/purify.Rd man/regressFactors.Rd man/rename_meta.Rd man/rowDataToBigWig.Rd man/rowExtremalities.Rd man/sesamask.Rd man/sesamiser.Rd man/sesamize.Rd man/switchMethBlocksGenome.Rd man/testIDATs.Rd man/vafClust.Rd
ttriche/sesamizeGEO documentation built on Nov. 12, 2023, 5:42 p.m.