getGSMs: fetch supplemental data (IDATs) for a given dataset
In ttriche/sesamizeGEO: the poor man's methylation suite (cf. `sesamizer`)
getGSMs R Documentation
fetch supplemental data (IDATs) for a given dataset
Description
There's probably a better way to do this, but we haven't found it.
IDAT files will be dumped into the working directory, so setwd() first.
Usage
getGSMs(GSMs, cachePath = NULL)
Arguments
GSMs
a vector of GEO sample IDs
cachePath
where the cached GEOmetadb SQLite file lives (tempdir())
Value
a list of supplementary filenames, usually 2 per GSM
ttriche/sesamizeGEO documentation built on Nov. 12, 2023, 5:42 p.m.
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| getGSMs | R Documentation |
fetch supplemental data (IDATs) for a given dataset
Description
There's probably a better way to do this, but we haven't found it. IDAT files will be dumped into the working directory, so setwd() first.
Usage
getGSMs(GSMs, cachePath = NULL)
Arguments
GSMs |
a vector of GEO sample IDs |
cachePath |
where the cached GEOmetadb SQLite file lives (tempdir()) |
Value
a list of supplementary filenames, usually 2 per GSM
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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