SNPcalls: fit a 1-to-3-component mixture model to flogit(SNPbetas) for...
In ttriche/sesamizeGEO: the poor man's methylation suite (cf. `sesamizer`)
SNPcalls R Documentation
fit a 1-to-3-component mixture model to flogit(SNPbetas) for each sample
Description
fit a 1-to-3-component mixture model to flogit(SNPbetas) for each sample
Usage
SNPcalls(SNPs)
Arguments
SNPs
a GenomicRatioSet or a matrix of SNP beta values
Details
Mclust(miser::flogit(x), G=1:3) is run for each sample.
Value
0/1/2 calls for each SNP in each sample
ttriche/sesamizeGEO documentation built on Nov. 12, 2023, 5:42 p.m.
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| SNPcalls | R Documentation |
fit a 1-to-3-component mixture model to flogit(SNPbetas) for each sample
Description
fit a 1-to-3-component mixture model to flogit(SNPbetas) for each sample
Usage
SNPcalls(SNPs)
Arguments
SNPs |
a GenomicRatioSet or a matrix of SNP beta values |
Details
Mclust(miser::flogit(x), G=1:3) is run for each sample.
Value
0/1/2 calls for each SNP in each sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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