rowDataToBigWig: convenience function to dump (e.g.) W matrix values to bigWig...
In ttriche/sesamizeGEO: the poor man's methylation suite (cf. `sesamizer`)
View source: R/rowDataToBigWig.R
rowDataToBigWig R Documentation
convenience function to dump (e.g.) W matrix values to bigWig files
Description
convenience function to dump (e.g.) W matrix values to bigWig files
Usage
rowDataToBigWig(x, mcol, fname = NULL, seqs = NULL, nmf = NULL)
Arguments
x
a GRanges, a SummarizedExperiment-like object, or its rowRanges
mcol
the name of the mcols column in x or rowData(x) to bigWigify
fname
the name of the bigWig file (else default to mcol.genome.bw)
seqs
optional seqinfo for any x without seqlengths
nmf
NMF object with rownames identical to x, for its W matrix
ttriche/sesamizeGEO documentation built on Nov. 12, 2023, 5:42 p.m.
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View source: R/rowDataToBigWig.R
| rowDataToBigWig | R Documentation |
convenience function to dump (e.g.) W matrix values to bigWig files
Description
convenience function to dump (e.g.) W matrix values to bigWig files
Usage
rowDataToBigWig(x, mcol, fname = NULL, seqs = NULL, nmf = NULL)
Arguments
x |
a GRanges, a SummarizedExperiment-like object, or its rowRanges |
mcol |
the name of the mcols column in x or rowData(x) to bigWigify |
fname |
the name of the bigWig file (else default to mcol.genome.bw) |
seqs |
optional seqinfo for any |
nmf |
NMF object with rownames identical to x, for its W matrix |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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