switchMethBlocksGenome: Given an object with methylation block coordinates, switch...

In ttriche/sesamizeGEO: the poor man's methylation suite (cf. `sesamizer`)

Given an object with methylation block coordinates, switch the genome

Description

Given an object with methylation block coordinates, switch the genome

Usage

switchMethBlocksGenome(x, to = c("hg38", "hg19"))

Arguments

x	a GenomicRatioSet or something like it with methBlock coords
to	the new genome to use (hg19 or hg38)

Details

stable is a weird flag and you probably should not use it. If and only if a probe maps to the same region in hg19 and hg38, it is deemed stable. That region can be one base pair wide, or it can be a thousand base pairs wide. The point is that this set of mappings is very small (about 4000 probes).

Value

     an object very much like x, but mapped onto `g`

See Also

    asMethBlocks

ttriche/sesamizeGEO documentation built on Nov. 12, 2023, 5:42 p.m.