dumpFromIDATs: read in a directory's worth of IDATs, flag controls,...
In ttriche/sesamizeGEO: the poor man's methylation suite (cf. `sesamizer`)
View source: R/dumpFromIDATs.R
dumpFromIDATs R Documentation
read in a directory's worth of IDATs, flag controls, sesamize, then dump
Description
for ease of factorization, inferred sex and flagged controls are written out
as a control/QC metrics matrix, along with the fraction of NAs among probes
that would not typically be masked by sesame, and the median total intensity
Usage
dumpFromIDATs(stub, path = ".", ...)
Arguments
stub
mandatory prefix for files (stub_betas.csv, stub_qc.csv)
path
where to save the dumped CSV files (".")
...
options to pass to sesamize
Value
a GenomicRatioSet (or an rgSet in case of failure)
ttriche/sesamizeGEO documentation built on Nov. 12, 2023, 5:42 p.m.
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View source: R/dumpFromIDATs.R
| dumpFromIDATs | R Documentation |
read in a directory's worth of IDATs, flag controls, sesamize, then dump
Description
for ease of factorization, inferred sex and flagged controls are written out as a control/QC metrics matrix, along with the fraction of NAs among probes that would not typically be masked by sesame, and the median total intensity
Usage
dumpFromIDATs(stub, path = ".", ...)
Arguments
stub |
mandatory prefix for files (stub_betas.csv, stub_qc.csv) |
path |
where to save the dumped CSV files (".") |
... |
options to pass to sesamize |
Value
a GenomicRatioSet (or an rgSet in case of failure)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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