assayToBigWigs: Dump data as bigWig tracks for (e.g.) igv.js (which can't...
In ttriche/sesamizeGEO: the poor man's methylation suite (cf. `sesamizer`)
View source: R/assayToBigWigs.R
assayToBigWigs R Documentation
Dump data as bigWig tracks for (e.g.) igv.js (which can't handle multiGCTs)
Description
Dump data as bigWig tracks for (e.g.) igv.js (which can't handle multiGCTs)
Usage
assayToBigWigs(x, assay = 1, genome = NULL, onlycg = TRUE)
Arguments
x
a RangedSummarizedExperiment-like object of some sort
assay
name or index of an assay to dump (default: assays(x)[1])
genome
(optional) genome to use (default: look in genome(x))
onlycg
(optional) only dump CpG probes (for methylation)? (TRUE)
Value
list a list of filenames dumped
ttriche/sesamizeGEO documentation built on Nov. 12, 2023, 5:42 p.m.
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View source: R/assayToBigWigs.R
| assayToBigWigs | R Documentation |
Dump data as bigWig tracks for (e.g.) igv.js (which can't handle multiGCTs)
Description
Dump data as bigWig tracks for (e.g.) igv.js (which can't handle multiGCTs)
Usage
assayToBigWigs(x, assay = 1, genome = NULL, onlycg = TRUE)
Arguments
x |
a RangedSummarizedExperiment-like object of some sort |
assay |
name or index of an assay to dump (default: assays(x)[1]) |
genome |
(optional) genome to use (default: look in genome(x)) |
onlycg |
(optional) only dump CpG probes (for methylation)? (TRUE) |
Value
list a list of filenames dumped
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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