yanwu2014/perturbLM
A lightweight R package that uses linear models to analyze the effects of chemical/genetic perturbations, conditions, and disease states on single gene expression.

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Functions
104
Source code
11
Man pages
48
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yanwu2014/perturbLM: A lightweight R package that uses linear models to analyze the effects of chemical/genetic perturbations, conditions, and disease states on single gene expression.
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API

API for yanwu2014/perturbLM
A lightweight R package that uses linear models to analyze the effects of chemical/genetic perturbations, conditions, and disease states on single gene expression.

Global functions
AvgGroupExpr Man page Source code
CalcClusterEnrich Man page Source code
CalcClusterEnrichPvals Man page Source code
CalcGeneModuleEffect Man page Source code
CalcGlmnet Man page Source code
CalcGlmnetPvals Man page Source code
CleanControls Man page Source code
CleanDesignCtrl Man page Source code
ClusterWiseDE Man page Source code
CreateDesignMatrix Man page Source code
CurateData Man page Source code
DesignMatrixGenotypes Man page Source code
EvaluateLinearModel Man page Source code
ExtractField Man page
FastRead Man page Source code
FilterGenesets Man page Source code
FisherEnrich Man page Source code
FlattenGroups Man page Source code
GetCoefMatrix Man page Source code
GroupClusterComp Man page Source code
GroupClusterCounts Man page Source code
GroupOverlapCounts Man page Source code
LoadGenesets Man page Source code
MergeGroupLists Man page Source code
MergeGroups Man page Source code
MultipleFisherEnrich Man page Source code
MultipleGSEAEnrich Man page Source code
PlotBox Man page Source code
PlotClusterComp Man page Source code
PlotCorrelation Man page Source code
PlotHexBin Man page Source code
PlotResiduals Man page Source code
PredictMixedLM Man page Source code
ReadGroups Man page Source code
RunCrossValidation Man page Source code
RunLinearModel Man page Source code
RunMixedLM Man page Source code
SetupLinearModel Man page Source code
SplitFoldsByGroup Man page Source code
StratifyGroupList Man page Source code
UnflattenGroups Man page Source code
Write10X Man page Source code
WriteGenesets Man page Source code
WriteGroups Man page Source code
calcPvalGreaterCpp Source code
calcPvalLessCpp Source code
calc_emp_pvals Source code
calc_pvals_cfs Source code
computeEMD Man page Source code
cross_entropy Man page Source code
cross_validate_lambda Man page Source code
fast_pvals Source code
flatten_score_matrix Source code
get_binned_list Source code
get_multi_bins Source code
hello Man page
omitNaCpp Source code
sortCpp Source code
yanwu2014/perturbLM documentation built on Aug. 24, 2023, 2:28 p.m.

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