API for yanwu2014/perturbLM
Analyzes effect of genetic perturbations on the transcriptome using a linear model. Based on the MIMOSCA python package (https://github.com/asncd/MIMOSCA)

Global functions
CalcGeneModuleEffect Man page Source code
CalcGlmnet Man page Source code
CalcGlmnetPvals Man page Source code
CleanDesignCtrl Man page Source code
DesignMatrixGenotypes Man page Source code
FilterGenesets Man page Source code
FisherEnrich Man page Source code
FlattenGenotypeList Man page Source code
GenesetDotPlot Man page Source code
GenotypeClusterCounts Man page Source code
GenotypeClusterPvals Man page Source code
GetCoefMatrix Man page Source code
LoadGenesets Man page Source code
MultipleFisherEnrich Man page Source code
MultipleGSEAEnrich Man page Source code
PadDesignMatrix Man page Source code
PlotCorrelation Man page Source code
PlotHexBin Man page Source code
PlotViolin Man page Source code
ReadGenotypes Man page Source code
UnflattenCellGenotypes Man page Source code
WriteGenesets Man page Source code
WriteGenotypes Man page Source code
calcPvalGreaterCpp Source code
calcPvalLessCpp Source code
calc_emp_pvals Source code
calc_pvals_cfs Source code
clean_genesets Source code
fast_pvals Source code
flatten_score_matrix Source code
get_binned_list Source code
get_multi_bins Source code
get_single_genotypes Source code
ggBarplot Man page Source code
hello Man page
omitNaCpp Source code
sortCpp Source code
yanwu2014/perturbLM documentation built on June 13, 2018, 5:19 p.m.