MultipleGSEAEnrich: GSEA over-enrichment test using liger
In yanwu2014/perturbLM: A lightweight R package that uses linear models to analyze the effects of chemical/genetic perturbations, conditions, and disease states on single gene expression.
MultipleGSEAEnrich R Documentation
GSEA over-enrichment test using liger
Description
GSEA over-enrichment test using liger
Usage
MultipleGSEAEnrich(
scores.list,
genesets,
n.rand = 1000,
n.cores = 1,
power = 1,
quantile.threshold = min(100/n.rand, 0.1)
)
Arguments
scores.list
List of scores to test enrichment for
genesets
List of genesets
n.rand
Number of randomizations
n.cores
Number of cores
power
GSEA exponent
quantile.threshold
Quantile threshold
Value
Dataframe with GSEA enrichment
yanwu2014/perturbLM documentation built on Aug. 24, 2023, 2:28 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| MultipleGSEAEnrich | R Documentation |
GSEA over-enrichment test using liger
Description
GSEA over-enrichment test using liger
Usage
MultipleGSEAEnrich(
scores.list,
genesets,
n.rand = 1000,
n.cores = 1,
power = 1,
quantile.threshold = min(100/n.rand, 0.1)
)
Arguments
scores.list |
List of scores to test enrichment for |
genesets |
List of genesets |
n.rand |
Number of randomizations |
n.cores |
Number of cores |
power |
GSEA exponent |
quantile.threshold |
Quantile threshold |
Value
Dataframe with GSEA enrichment
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.