Files in yanwu2014/perturbLM
A lightweight R package that uses linear models to analyze the effects of chemical/genetic perturbations, conditions, and disease states on single gene expression.
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R
R/curation.R
R/data_handling.R
R/diff_expression.R
R/enrichment.R
R/glmnet.R
R/glmnet_deprecated.R
R/input_output.R
R/network.R
R/phemd.R
R/plotting.R
README.md
demos/elasticnet_demo.Rmd
demos/elasticnet_demo.nb.html
man/AvgGroupExpr.Rd
man/CalcClusterEnrich.Rd
man/CalcClusterEnrichPvals.Rd
man/CalcGeneModuleEffect.Rd
man/CalcGlmnet.Rd
man/CalcGlmnetPvals.Rd
man/CleanControls.Rd
man/CleanDesignCtrl.Rd
man/ClusterWiseDE.Rd
man/CreateDesignMatrix.Rd
man/CurateData.Rd
man/DesignMatrixGenotypes.Rd
man/EvaluateLinearModel.Rd
man/ExtractField.Rd
man/FastRead.Rd
man/FilterGenesets.Rd
man/FisherEnrich.Rd
man/FlattenGroups.Rd
man/GetCoefMatrix.Rd
man/GroupClusterComp.Rd
man/GroupClusterCounts.Rd
man/GroupOverlapCounts.Rd
man/LoadGenesets.Rd
man/MergeGroupLists.Rd
man/MergeGroups.Rd
man/MultipleFisherEnrich.Rd
man/MultipleGSEAEnrich.Rd
man/PlotBox.Rd
man/PlotClusterComp.Rd
man/PlotCorrelation.Rd
man/PlotHexBin.Rd
man/PlotResiduals.Rd
man/PredictMixedLM.Rd
man/ReadGroups.Rd
man/RunCrossValidation.Rd
man/RunLinearModel.Rd
man/RunMixedLM.Rd
man/SetupLinearModel.Rd
man/SplitFoldsByGroup.Rd
man/StratifyGroupList.Rd
man/UnflattenGroups.Rd
man/Write10X.Rd
man/WriteGenesets.Rd
man/WriteGroups.Rd
man/computeEMD.Rd
man/cross_entropy.Rd
man/cross_validate_lambda.Rd
man/hello.Rd
perturbLM.Rproj
src/.gitignore
src/RcppExports.cpp
src/cpp_funcs.cpp
