AvgGroupExpr: Compute average (scaled) expression of cells in each group
In yanwu2014/perturbLM: A lightweight R package that uses linear models to analyze the effects of chemical/genetic perturbations, conditions, and disease states on single gene expression.
View source: R/data_handling.R
AvgGroupExpr R Documentation
Compute average (scaled) expression of cells in each group
Description
Compute average (scaled) expression of cells in each group
Usage
AvgGroupExpr(m, groups, do.scale = F, scale.max = 6, min.cells = 3)
Arguments
m
Expression matrix
groups
Perturbation dictionary or vector
do.scale
Scale expression matrix before averaging
scale.max
If do.scale is True, maximum scaled value
min.cells
Minimum cells per group to average over
Value
Matrix of average expression per group
yanwu2014/perturbLM documentation built on Aug. 24, 2023, 2:28 p.m.
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View source: R/data_handling.R
| AvgGroupExpr | R Documentation |
Compute average (scaled) expression of cells in each group
Description
Compute average (scaled) expression of cells in each group
Usage
AvgGroupExpr(m, groups, do.scale = F, scale.max = 6, min.cells = 3)
Arguments
m |
Expression matrix |
groups |
Perturbation dictionary or vector |
do.scale |
Scale expression matrix before averaging |
scale.max |
If do.scale is True, maximum scaled value |
min.cells |
Minimum cells per group to average over |
Value
Matrix of average expression per group
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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