CalcGlmnet: Calculate penalized linear regression with glmnet

In yanwu2014/perturbLM: A lightweight R package that uses linear models to analyze the effects of chemical/genetic perturbations, conditions, and disease states on single gene expression.

Calculate penalized linear regression with glmnet

Description

Calculate penalized linear regression with glmnet

Usage

CalcGlmnet(design.matrix, metadata, y, alpha, lambda.use, family, ctrl = NULL)

Arguments

design.matrix	Design matrix for regression
metadata	Additional covariates to take into account (will not be permuted)
y	Linear model response
alpha	Elasticnet ratio: (0 is fully L2, 1 fully is L1)
lambda.use	Coefficient regularization parameter
family	Regression family to use
ctrl	Control variable in the design matrix (optional)

Value

Matrix of regression coefficients

yanwu2014/perturbLM documentation built on Aug. 24, 2023, 2:28 p.m.