MergeGroups: Merge perturbations with the same pattern in names. For...

In yanwu2014/perturbLM: A lightweight R package that uses linear models to analyze the effects of chemical/genetic perturbations, conditions, and disease states on single gene expression.

Merge perturbations with the same pattern in names. For example, we might want to collapse all guide RNAs into the gene they target (i.e. TULP2-1, TULP2-2, TULP2-3 into TULP2)

Description

Merge perturbations with the same pattern in names. For example, we might want to collapse all guide RNAs into the gene they target (i.e. TULP2-1, TULP2-2, TULP2-3 into TULP2)

Usage

MergeGroups(group.list, pattern, new.group.name = NULL)

Arguments

group.list	Perturbation dictionary (in list format)
pattern	Character pattern to collapse (i.e. TULP2)
new.group.name	Name of new perturbation (default: pattern)

Value

List of perts with all perturbations containing the pattern merged

yanwu2014/perturbLM documentation built on Aug. 24, 2023, 2:28 p.m.