MultipleFisherEnrich: Count over-enrichment for a list of gene markers
In yanwu2014/perturbLM: A lightweight R package that uses linear models to analyze the effects of chemical/genetic perturbations, conditions, and disease states on single gene expression.
MultipleFisherEnrich R Documentation
Count over-enrichment for a list of gene markers
Description
Count over-enrichment for a list of gene markers
Usage
MultipleFisherEnrich(markers.list, all.genes, genesets, correct = F)
Arguments
markers.list
List of top marker genes
all.genes
Vector of all background genes
genesets
List of genesets
correct
FDR correction
Value
Dataframe with group, genesets, Fisher enrichment p-values (p.val),
number of genes in the geneset (genes_in_set),
size of each geneset (geneset_size)
yanwu2014/perturbLM documentation built on Aug. 24, 2023, 2:28 p.m.
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| MultipleFisherEnrich | R Documentation |
Count over-enrichment for a list of gene markers
Description
Count over-enrichment for a list of gene markers
Usage
MultipleFisherEnrich(markers.list, all.genes, genesets, correct = F)
Arguments
markers.list |
List of top marker genes |
all.genes |
Vector of all background genes |
genesets |
List of genesets |
correct |
FDR correction |
Value
Dataframe with group, genesets, Fisher enrichment p-values (p.val), number of genes in the geneset (genes_in_set), size of each geneset (geneset_size)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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