ClusterWiseDE: Compute per-cluster differential expression between...

In yanwu2014/perturbLM: A lightweight R package that uses linear models to analyze the effects of chemical/genetic perturbations, conditions, and disease states on single gene expression.

Compute per-cluster differential expression between conditions

Description

Compute per-cluster differential expression between conditions

Usage

ClusterWiseDE(
  obj,
  cluster.var,
  condition.var,
  condition.1,
  condition.2,
  min.cells = 10,
  ...
)

Arguments

obj	Seurat object
cluster.var	Name of cluster metadata column
condition.var	Name of condition metadata column
condition.1	Name of first condition to compare
condition.2	Name of second condition to compare
min.cells	Minimum cells per cluster/condition combination
...	Additional keyword parameters to pass to FindMarkers

Value

Dataframe with per-cluster DE results

yanwu2014/perturbLM documentation built on Aug. 24, 2023, 2:28 p.m.