computeEMD: Visualize correlation between two vectors. Adapted from PhEMD...
In yanwu2014/perturbLM: A lightweight R package that uses linear models to analyze the effects of chemical/genetic perturbations, conditions, and disease states on single gene expression.
computeEMD R Documentation
Visualize correlation between two vectors.
Adapted from PhEMD (https://bioconductor.org/packages/release/bioc/html/phemd.html)
Description
Visualize correlation between two vectors.
Adapted from PhEMD (https://bioconductor.org/packages/release/bioc/html/phemd.html)
Usage
computeEMD(pheno.dict, clusters, clusters.dists)
Arguments
pheno.dict
Named list of cell vectors for each genotype
clusters
Cell type assignments
clusters.dists
Matrix of distances between cell type centroids
Value
Earth mover's distance between all genotypes
yanwu2014/perturbLM documentation built on Aug. 24, 2023, 2:28 p.m.
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| computeEMD | R Documentation |
Visualize correlation between two vectors. Adapted from PhEMD (https://bioconductor.org/packages/release/bioc/html/phemd.html)
Description
Visualize correlation between two vectors. Adapted from PhEMD (https://bioconductor.org/packages/release/bioc/html/phemd.html)
Usage
computeEMD(pheno.dict, clusters, clusters.dists)
Arguments
pheno.dict |
Named list of cell vectors for each genotype |
clusters |
Cell type assignments |
clusters.dists |
Matrix of distances between cell type centroids |
Value
Earth mover's distance between all genotypes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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