FisherEnrich: Use Fisher's exact test to calculate enrichment for count...
In yanwu2014/perturbLM: A lightweight R package that uses linear models to analyze the effects of chemical/genetic perturbations, conditions, and disease states on single gene expression.
FisherEnrich R Documentation
Use Fisher's exact test to calculate enrichment for count data
Description
Use Fisher's exact test to calculate enrichment for count data
Usage
FisherEnrich(marker.genes, genesets, n.background, correct = F)
Arguments
marker.genes
Top marker genes
genesets
List of genesets
n.background
Number of background genes
correct
FDR correction
Value
Dataframe with genesets, Fisher enrichment p-values (p.val), number of genes in the geneset (genes_in_set),
size of each geneset (geneset_size)
yanwu2014/perturbLM documentation built on Aug. 24, 2023, 2:28 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| FisherEnrich | R Documentation |
Use Fisher's exact test to calculate enrichment for count data
Description
Use Fisher's exact test to calculate enrichment for count data
Usage
FisherEnrich(marker.genes, genesets, n.background, correct = F)
Arguments
marker.genes |
Top marker genes |
genesets |
List of genesets |
n.background |
Number of background genes |
correct |
FDR correction |
Value
Dataframe with genesets, Fisher enrichment p-values (p.val), number of genes in the geneset (genes_in_set), size of each geneset (geneset_size)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.