ScreenData-class: S4 class for a synergy screen data

In ybukhman/SynergyScreen: Analyze and simulate synergy screen data

Description

A ScreenData class object contains a special data frame containing response values for microtiter plate wells

Details

Initial implementation supports 96-well, 8*12 plates. Plate rows should be named A-H and columns 1-12. ScreenData data frame must contain the following columns:

1. plate plate identifier

2. column column number, numeric, integer between 1 and 12

3. row row, character or factor with values or levels A-H

4. response numeric response value, e.g. OD

Additional columns are allowed and will be ignored by SynergyScreen software. Correctness of the data frame structure is verified by a validity method and can be checked by calling validObject().

See Also

data.frame, validObject

Examples

data(sim15_screen3)
head(raw_data(sim15_screen3),30)
str(raw_data(sim15_screen3))

ybukhman/SynergyScreen documentation built on May 4, 2019, 2:31 p.m.